Amber (Assisted Model Building with Energy Refinement) is a suite of programs that allow users to perform molecular dynamics (MD) simulations on biological systems and to store different calculations. The AMPS-NMR portal is provided by Magnetic Resonance Center of the University of Florence and the Interuniversity Consortium CIRMMP.
The AMPS-NMR portal is free to use upon registration on the website.
The AMPS-NMR portal uses EGI High-Throughput Compute resources.
Bertini et al. (2011). A Grid-enabled web portal for NMR structure refinement with AMBER. Bioinformatics Journal. doi: 10.1093/bioinformatics/btr415. (Full text, Open Access)
Sala et al. (2016). A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions. Journal of Biomolecular NMR. doi: 10.1007/s10858-016-0065-6.