AMBER

A web portal for Nuclear Magnetic Resonance (NMR) structures

Amber (Assisted Model Building with Energy Refinement) is a suite of programs that allow users to perform molecular dynamics (MD) simulations on biological systems and to store different calculations. The AMPS-NMR portal is provided by Magnetic Resonance Center of the University of Florence and the Interuniversity Consortium CIRMMP.

The portal was developed with the help of the WestLife and INDIGO-DataCloud projects and supported by the MoBrain Competence Centre, under the EGI-Engage project.

Access policy

The AMPS-NMR portal is free to use upon registration on the website.

AMBER & EGI

The AMPS-NMR portal uses EGI High-Throughput Compute resources.

References

Bertini et al. (2011). A Grid-enabled web portal for NMR structure refinement with AMBER. Bioinformatics Journal. doi: 10.1093/bioinformatics/btr415. (Full text, Open Access)

Sala et al. (2016). A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions. Journal of Biomolecular NMR. doi: 10.1007/s10858-016-0065-6.