Scientific applications and tools

The scientific applications and tools presented here are provided by members and partners of the EGI Community.

They are not part of the EGI Service Catalogue but they rely on EGI services to run, for example High-Throughput Compute or Cloud Compute.

Some of the applications can be accessed via the EGI Applications on Demand service.

  • For Life Sciences

HADDOCK

Computational tools to model complexes of proteins and other biomolecules

PowerFit

A tool for rigid body fitting of atomic structures into cryo-EM density maps

DisVis

Visualise and quantify the accessible interaction space in macromolecular complexes

Virtual Imaging Platform

Web portal for medical simulation and image data analysis

Chipster

Open source platform for data analysis

NBIS toolkit

Bioinformatics tools for the life science research community (e.g. SCAMPI, TOPCONS)

Galaxy

Open source platform for biomedical research

NAMD

A tool for biomolecular modeling

ClustalW2

A platform for multiple alignment of nucleic acid and protein sequences

AutoDock Vina

A molecular docking and virtual screening program

AMBER

A web portal for Nuclear Magnetic Resonance (NMR) structures

CS-ROSETTA

A web portal for the 3D structure prediction of proteins

FANTEN

A platform for multiple alignment of nucleic acid and protein sequences

  • For Arts & Humanities

Peachnote

Discover new sides of music, find great performances and improve your score reading

DARIAH Gateway

Cloud applications and services for Arts & Humanities researchers

  • For Earth Sciences

Geohazards TEP

Supporting the exploitation of satellite EO for geohazards

The EXtraS portal

A web portal for analysing the data gathered by the XMM Newton satellite

  • For Computer Science & Mathematics

GNU Octave

An open-source software for numerical computations

The Jupyter Notebook

An open-source application for creating and sharing documents

The R Software

An open-source software for statistical computing and graphics

  • Multi-disciplinary

D4Science

Online tools for data validation, data enrichment and efficient data analysis